PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G469700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 474aa    MW: 52870.7 Da    PI: 7.1398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G469700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12299345354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Aqcoe5G469700.1.p 299 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLGDAVSYINEL 345
                        689************************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-5025202IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.15E-18293361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-13299349No hitNo description
PfamPF000109.0E-10300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16300363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-15302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MMVSSSYTSP SSTFSSPGQE ALSTLQKRLH FFVQSRPEQW AYAIFWRKGE EENGGVVLAW  60
GDGHFKGNQE FDVVCKQPTQ DKLGLGLERK RSLQGLLCDS NFWADDESME DVTDLEWFYM  120
VSMTRSFAIG EDLPGKAYGT GNSAWLNSTQ KLQQYSERTK EAQMHGIQTF VCIPTSSGVV  180
ELGSSDIIKE NWGLTQQAKS LFGSEVAGLV SKQPSPGGLL PFLDRNLSFA DIGITTGVHK  240
HVQQEHEAET RKEVAKTGLS SSLDSEHSNS DGPFVALALE KRKPKKRGRR PGNGRDAPMN  300
HVEAERQRRE KLNHRFYALR AVVPNVSRMD KASLLGDAVS YINELKAKID NLEAQVHKYS  360
KKIKIEKLNS KDHHQHGMVD DHYPRSDSES AGLLKMEVEV RIHGPDAMIR VQCQNMNHPS  420
AKLMDALRDL DLQVQHASVA SVKDLMLQDI VARVPEGLRT EESLKAALIS RLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-28242028192Transcription factor MYC3
4rqw_B4e-28242028192Transcription factor MYC3
4rs9_A4e-28242028192Transcription factor MYC3
4yz6_A4e-28242028192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281289RKPKKRGRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.11e-173Basic helix-loop-helix DNA-binding family protein
TrEMBLA0A061DS371e-173A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGPOPTR_0002s17750.11e-166(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.17e-74NACL-inducible gene 1